NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213922_1005076

Scaffold Ga0213922_1005076


Overview

Basic Information
Taxon OID3300021956 Open in IMG/M
Scaffold IDGa0213922_1005076 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4042
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9263Long. (o)-83.4268Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000311Metagenome / Metatranscriptome1326Y
F001043Metagenome / Metatranscriptome794Y
F002935Metagenome519Y
F063705Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0213922_100507610F000311GGAGGMYFELTAPSQMAFAQAIWDAELIGLDPEQCGPLTFNIGTGSIEKVSRIRDKYGLTESYWSEYEKTGY
Ga0213922_100507612F002935N/ARNKMRDRTKGYEGKLIDGKKLAEIANAIYALQYSDDFNKCTIDNLLFIELEEKNVFGEPKYALVCSEGVGWEQDEYGCLEVPTNIGQMGLWNGRVFISVDTVKSCVTDTVADISDYIRTFGDRLDRNCMLWQSKMSVVPATISL
Ga0213922_10050762F000263AGGMNNEDIGLPPHLQRMVNAGVSGLDIMHGELKNLMLIAEQELAEAQAIEDESEEAMDSMDRTRCEGALDTLVSLYDLTYQLSFAISDKERRDSGEINERNQQ
Ga0213922_10050763F063705AGGMTLLDLDWKKMTKSSAFIEYMKVHLISLNQDLEDARNNEPLNEDEHWESDDYYYGAIEATNHLLSVALGIMAESNERYIYE
Ga0213922_10050769F001043AGGAGMSDYRDGFDDGYKFAREEIMEKLAEIDINDIDSWILGKLSEMIEGGEL
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