NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213922_1005347

Scaffold Ga0213922_1005347


Overview

Basic Information
Taxon OID3300021956 Open in IMG/M
Scaffold IDGa0213922_1005347 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3936
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9263Long. (o)-83.4268Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002909Metagenome521Y
F068841Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0213922_10053475F002909N/AMAEIDISKLGDRLDSFLDDAIDPNSLLQQIIVNWWNNKVYPEIARSMDEKKINASSVLKQSFIPGEITKTPTSINTILLAEDYWEFLEYGRKPTKNGHIEGTPFLWQSIEKWMAFKGIKPTNPDMSYQSLAKAIARKIHRRGTKATHFLSDAFTESLQMELVNELNARLGDLIFSEDIKI
Ga0213922_10053477F068841GGAGGMIELAVNGWILSTPGIVKTQKYVYTIEAVDNWLINNHLDELRNYVISNQVGFGDCVATEFDGINSEAFFHHEPDKFTLLFMLGQKTNFL
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