NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213922_1007956

Scaffold Ga0213922_1007956


Overview

Basic Information
Taxon OID3300021956 Open in IMG/M
Scaffold IDGa0213922_1007956 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3062
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9263Long. (o)-83.4268Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008132Metagenome / Metatranscriptome338Y
F051126Metagenome / Metatranscriptome144Y
F084151Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0213922_10079563F084151AGAAGMTIEYSLWQGSRLLSIGNTATSIKDIDKVVAELNDSTLGKALKFSANVMKVEVK
Ga0213922_10079564F008132GAGGMTKWDTIQADVQDQYAHLEEEEAYTTMLDEEEDMFGFIKAIQIDHLTDEQLDEVFNMFGD
Ga0213922_10079565F051126AGGMSARSISIPALLVGTHYRSITRHDEGTINYAEKREGLWYGEDIEAYAIRVTPTRGINDFWATIAVNTAK
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