NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213922_1008016

Scaffold Ga0213922_1008016


Overview

Basic Information
Taxon OID3300021956 Open in IMG/M
Scaffold IDGa0213922_1008016 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3047
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9263Long. (o)-83.4268Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011142Metagenome / Metatranscriptome294Y
F043286Metagenome156Y
F077016Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0213922_100801611F011142N/AMAVVKVSGKVSKIFGASSQGLSLVESYKSATGEDYTRTWTVWFAVSHNLPEGSEVTVFGQLSAKIEDFEDKTGKPGRKVKLDINNAQVEAPKAPVVSAPF
Ga0213922_100801612F043286N/AQDNQVECRRCGFRWAVNAEKRGRKDLLCISCRVKPATTIQYGKLRCSPHQGKLDQDLNPIDEQGNLILSGERICGHRDCVNPAHVVAE
Ga0213922_10080165F077016N/AMSAERVREYYRKQGEERERARLIDLLMEQNVIRICGVTGKLVFVNCNTLEVLYLKDELLNEVAA
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