NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213922_1009002

Scaffold Ga0213922_1009002


Overview

Basic Information
Taxon OID3300021956 Open in IMG/M
Scaffold IDGa0213922_1009002 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2835
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9263Long. (o)-83.4268Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002162Metagenome / Metatranscriptome588Y
F002357Metagenome / Metatranscriptome567Y
F007469Metagenome / Metatranscriptome350Y

Sequences

Protein IDFamilyRBSSequence
Ga0213922_10090024F002357GGAGGMAFNLEDYEDVATLNKWFISNFPLGRSDLSVISHDPEKGYILIQSTLWRDSKDAAPAVSNVAFGSRETYIPNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMKKVEVNPTFKEKLEAKQNLYGKSGRSAAIETALRASFEADKEPAPVAWSVGDVVDQIGSSTPNEPPACEHGHILKNGVSKGGKPYYGYVCKAKECEPKWAKLTANGKWYFEGGE
Ga0213922_10090025F007469AGGAGGMGELQIIDGSGLTATFTDDGIVVEPSTEHCELCNDDRLLHEGDLLRCYSCHAINRIPYNA
Ga0213922_10090026F002162GGAMPKYDYMCDGEGLLIVLDLPMDHKIPHCQVCKAPLRRVFTAVPAIFKGTGWAGKNG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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