NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213922_1010028

Scaffold Ga0213922_1010028


Overview

Basic Information
Taxon OID3300021956 Open in IMG/M
Scaffold IDGa0213922_1010028 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2650
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9263Long. (o)-83.4268Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020139Metagenome / Metatranscriptome225Y
F082396Metagenome / Metatranscriptome113Y
F088778Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0213922_10100283F082396AGGAMTHRIVVNVQTGETTIVEYTPEEQAIHDAAVAAQQAEQPATPTEAQ
Ga0213922_10100286F088778GAGGMSALGWIFAVILVALMLPLLAFLYLDVLTQKAEVKQQTEKVEKLRREIERTKRDKTPDSITDNPVFDRVRRPF
Ga0213922_10100288F020139GAGMSLLNPWVILGIVFSVLSAFGGGYYKGKDAEYQRQQLEIAALNAKARETEQAMSKVAQTYGETLRKANNVAKLKETKLRADLDSGALKLRIPVKAANCP
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