NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213922_1011906

Scaffold Ga0213922_1011906


Overview

Basic Information
Taxon OID3300021956 Open in IMG/M
Scaffold IDGa0213922_1011906 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2387
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9263Long. (o)-83.4268Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063689Metagenome129Y
F066774Metagenome / Metatranscriptome126Y
F104778Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0213922_10119062F066774AGGAMTQENTMSNLETWVRQLNGELNVQEIAKTKPAPIPDVVAPYAVFLRMFDKVGLCAATNKRRASRCNVEFVFDGNTRKLKDVRMINQDEE
Ga0213922_10119066F104778AGGTGGMETKAWLIEEFNNNNELVWKMISFFEPDSLEWMRDLKGKKHNLVISELGVKNSKTINGVEKKYDSSKFVVGL
Ga0213922_10119067F063689GAGMEVLFRYLVFDDFGEPIIRFRTKHEADCYVLHRPNHKIKRLPPQPKENVFDLITDEPPF
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