NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213922_1021018

Scaffold Ga0213922_1021018


Overview

Basic Information
Taxon OID3300021956 Open in IMG/M
Scaffold IDGa0213922_1021018 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1657
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9263Long. (o)-83.4268Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018529Metagenome / Metatranscriptome234Y
F065550Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0213922_10210183F065550GGAMKMLIDTADLTIPLRYYKGWNIEFTTKTERFNSPILGLFGFSSVIDLEKAIDYALEKRAKAE
Ga0213922_10210184F018529GGAGMNLQEFKKVFTEYGGSIGPEQIDALAEFAPDLPLGVKVGYGSRFTTSAKNFKLDLENNTKYHLDVHNVDQYVRDVFVPCSTYDEVRRIFGWENKY

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