NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213922_1032346

Scaffold Ga0213922_1032346


Overview

Basic Information
Taxon OID3300021956 Open in IMG/M
Scaffold IDGa0213922_1032346 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1245
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9263Long. (o)-83.4268Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F094955Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0213922_10323461F094955N/ADQFLADFRDPENMEDFDPEAAMAEGVDAEQSILTDAISRNTVYTAKYKLTGYNINIKFHPIAQHYWICDPTVPEMKDQPFCGYYDPMTIQEATELYPGINLEEFELHAEYNMNGAYQAGSVLNNLAIHARDSVPVMGIPVSSAASADPDSRQVSIVTVWNKYDIDGDGELELVELIYSGSYIISAREVEFIPVANMCPKPLPGNFYGMSIAESVIPAQEYNTSAARAEIQLGLLTATPRLGVKPDRLDFEMLQDGEAAIFILDSKFDPAKDIYQIPPPSGNLQFLESAMTRIQQDTMAMVGMTTPQDVFNPEVMAAGNSGVKLQMALTPNQIIQDNTVRNAAEGLKEALWLVWRTLIQYGDDYGVKKLASTCHPDKKPVFLDYLAWDDMNFCERHQISLELALGMKSEENALGR
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