NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0213922_1033731

Scaffold Ga0213922_1033731


Overview

Basic Information
Taxon OID3300021956 Open in IMG/M
Scaffold IDGa0213922_1033731 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1210
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9263Long. (o)-83.4268Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001840Metagenome / Metatranscriptome627Y
F009682Metagenome / Metatranscriptome314Y
F036669Metagenome / Metatranscriptome169N

Sequences

Protein IDFamilyRBSSequence
Ga0213922_10337311F001840N/AVKEEKNSEFLICDCHSHGLLVEKFDDEEEVCLSLFERGLDGRILSMSSRLRWCWQILRYGKPWSDFVILNTENQKRLKEFL
Ga0213922_10337312F036669AGGAGGMGMYDSIECKCFLPMPDEPKGYTGSHGFQTKDFDCALDIYIIDENGQLFIERRETEWVEGDPNAKGFLDKVGYIKTKKTWLESVNKTCTVQFYDFFSSNNTDYDYWIVYDAVFIDGKIKDIKLTTFEASPNSERKKKDIEFHKKMREWDEFKKTRRYKYLLNPYNKILKFVCDKVYKALCFLSSRVWRVHNFLMIK
Ga0213922_10337313F009682N/AMKKDLYMKNPNEKIVIQSDDLKYDGKNIIIPSYYDGVICDYLNRVDVKGMNDADHQDYLAFRKFFEDIMDYKADKGGN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.