NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213922_1059242

Scaffold Ga0213922_1059242


Overview

Basic Information
Taxon OID3300021956 Open in IMG/M
Scaffold IDGa0213922_1059242 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)833
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9263Long. (o)-83.4268Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003408Metagenome / Metatranscriptome488Y
F003543Metagenome / Metatranscriptome480Y

Sequences

Protein IDFamilyRBSSequence
Ga0213922_10592421F003543N/AMADETIVTNIVANANFSSLIANVQKATAELAQLKGTLATTNKALAMDAAKIQQGFAATLRSTGQFSTHFVSLTSDVDKFGKNLDQGKLKLKDYFNTFQAHTKTSGGLIRELARQQVQLQNSILQPLGRNAEGLMQFNVQIPRGLDATKNKAALARQEMQIFNKVIQDGGVQLI
Ga0213922_10592422F003408N/AVFLIGAWKSYQELEENISMPELIQTLKSMNKKEEETRKFLAGLQGVSLDSDEKKEGPSFEDIRRKALGINASGDDVVSLQGAIAAETGFGINAGLGYELG
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