NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0222717_10000086

Scaffold Ga0222717_10000086


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10000086 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)72552
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (20.97%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010278Metagenome / Metatranscriptome306Y
F022286Metagenome / Metatranscriptome215Y
F056655Metagenome / Metatranscriptome137Y
F059355Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0222717_1000008628F059355AGGMKLMTILEQIVFSTYEGMVRIMYQEGESEDLAELLRALPGVTTVTNAGSASEMSSMTFKVKLISQKGGEEAFNSFKANAKKKYSNIIKIEIAVETIQEK
Ga0222717_1000008646F010278N/AMKKSELTKIIKEVLEEGPHDPVKPGILKKRLGKLSCSKVRKAKSGLKDKGTHYAKALQRYLNYHCQ
Ga0222717_1000008657F022286N/AMKLSRVILGEILEYNPAFEKVTDQLRDKGGKYLGSGDYGSAYLLNGRVYKATTDEVELEHAAILKGKKTNNFARIYDVEVINPKLGVIQMEVLGEFKGDIPEEWVEALERESERIGIDPEELDIRPSNIMVNQKNHLKLVDI
Ga0222717_1000008661F056655GGAMEITWKQFKNQSHIRILTENEQIRHYRFYLDSLANEMKKQNKGPRIPRIRVTGFLLQEDLFLIQQENGSSIYITNYA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.