NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10000347

Scaffold Ga0222717_10000347


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10000347 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40040
Total Scaffold Genes66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)59 (89.39%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021268Metagenome / Metatranscriptome219N
F093629Metagenome / Metatranscriptome106Y
F097370Metagenome / Metatranscriptome104Y
F100469Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0222717_1000034710F100469AGGAGMSEVTTNHKAYLNGCYVNFERNGKRAFGFVSEVFDEGFGVDMVVHDDKGFPGHNTDYTVFVKTDEVYR
Ga0222717_1000034712F097370AGGAGMENSLNLYAKAFNSGMEATEICEILHEKCKFHDWTFMMADDSRAYHAGLKEADEIEYIRGVLDAMGFGMTAKIIIEGWTPDSLKTKGYLI
Ga0222717_1000034714F093629GAGMARVIYQDAFDREELEGEIDFNKALQILKGFMGIEDTLDCLKAFEARYEKAEQEMFESDEYHCWYREWRYEIFSYNLLVEGFSKLFAPKEAS
Ga0222717_1000034718F021268GAGGMSYLIHQFHLSNEASDHLNKVGWDGDFGDFPEIAIHRDVKFMGGSEKFEPWMSDHFASVARVTGVDTLEDVFHVGNGYGPEGSCIQKFTRMHSVSVGDIIVNEKCGTAWMVDGEGWSNVDFGRQF
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