NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10000418

Scaffold Ga0222717_10000418


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10000418 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36909
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (90.00%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000256Metagenome / Metatranscriptome1448Y
F004952Metagenome417Y
F005590Metagenome / Metatranscriptome395N
F005843Metagenome / Metatranscriptome388Y
F009460Metagenome / Metatranscriptome317N
F010322Metagenome / Metatranscriptome305N
F020173Metagenome225N
F025969Metagenome / Metatranscriptome199N

Sequences

Protein IDFamilyRBSSequence
Ga0222717_1000041815F000256GAGGMADGVSGIGSAPFNVQSDIHQQTQTRERIEAHLVEQRVTKEHRANHTHLESLREQKLDLGKGYDKFGTKTNADRPQGTNINIEV
Ga0222717_1000041821F004952GGAGMNLTHTHEFLITHITDSGTGFAVRTDNGESVHISPRLLQQAHANLDDICKGIIVQNAVEEQRERTPWVAAYVQERRAARDVLGLATDAPAEAVQAPTEEPKPIDWADVQRRIIAMLQSADVTYCETADISDVVGVEPRKLSQHLENMHARGEICRAHVNQRANQQRATLVLWSINADVYK
Ga0222717_1000041822F020173GGAMICTTCDGTGFIELPRFVNTPDSDAWTTVRCPECQDEDDFDWRNEEEE
Ga0222717_1000041825F005843N/AMMALALRLNMKVGLKMTLAEPVFMAFAVFSSVDECKAFAKYYDLARIFEPQCVEMGGEADYRRPWPDVRPKPRPTQESENG
Ga0222717_1000041826F009460AGGAGMAKWDLTKLENSASVGAYIDEDSSTPTQPTPLMLVMSIRRKADILRMDAGRGPERLTIKQRAEEIMALCEMLEKRL
Ga0222717_1000041829F005590GGAGGMTESLTPLERWKELAIIENARMKRRLIGRDDMHAYAHKPWPLEKLRKEIKRCLSRHGELSVGDLCSMIEQDAVHIDIGLKTMRERRTIIKTSFIEGQQLYRLRTQEEFAF
Ga0222717_1000041831F010322GGAMVWTCSVDDDFTLTPEQHAEMSAVASNTMSEANTLMRDMMAITERTELPDLAKVYALGAALQSVIGFMRENDCDVQDAIAMTMGIIFETYSTPDKEDMH
Ga0222717_1000041846F025969AGAAGMWTALLLLCSVEGKCFAFGSPVMQSESQCIQSIPSGLKYARQMFPAYRATDYQCVQWGEG
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