NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10000834

Scaffold Ga0222717_10000834


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10000834 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26018
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (74.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051472Metagenome144N
F061293Metagenome132Y
F074038Metagenome120Y
F081771Metagenome114N
F105904Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0222717_1000083418F074038AGGAGMDIEKIQQQVADLKNNVSLLEHATVSEFNSDLLTSLHRITDVLDDLQPRVIDPADLSKEAEQKVLNTLSELTARIDAVEGAMWTEERVEEIVSTEIRNTDFRADVDVYAQ
Ga0222717_100008342F051472N/AMTPKSTQRTGKRYSERKMPKTVPKFNKPLIFGYYIHARPELGEIKWQWSDQRKQFWEDWIPKDKDLIIHTKLSADHEQLFRDAFWQDMEDEIRNTKDSLNARARERRAKKKANANQGSHPAA
Ga0222717_1000083420F081771GAGMMGAVGYRISHTDESQDYPIATIKIAFKMPEGENGRIEMFHVHEALRRMIDKKQISFDLTLPPQPPQEPSI
Ga0222717_1000083426F105904AGGAGMGQVKYTTVEILEKLSQQAEEFGKNRYPDVSMVKNALIELGYDLELVKLPITFTMDHNDVEVRARFVIPGPDPEQNEAFYLDMEYEDYNNLPCVELPDNIEADEL
Ga0222717_1000083429F061293AGGAGGMQDPIIESGIPLPEDQRSQTSYPFAKMNVGDSIFFQLSPSDNSQRMKNRLAQASRGFGKKQEPEWKFVIRYRLEDEISGVRVWRSL
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