NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10004483

Scaffold Ga0222717_10004483


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10004483 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10284
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005590Metagenome / Metatranscriptome395N
F009460Metagenome / Metatranscriptome317N
F010322Metagenome / Metatranscriptome305N
F020173Metagenome225N
F054773Metagenome139N

Sequences

Protein IDFamilyRBSSequence
Ga0222717_1000448311F020173GGAMICTTCDGTGFIELPRFVNTPDSDAWTTVRCPECQDEDDFDWHNEEEEE
Ga0222717_1000448312F054773AGGAGGMTKQENIISIVSEAVEKAWEGSSSAKEASEKYLAMLQQDDVLREEATRRHLERIAYLDVVAQPRGYRARLKRAAHQTVLSKGETSTPAVSLKNMAPAYAKDMFERWLLPNTGICLGDATSEDLEQAIMHETSRSKHHEGQRSFYSAIKARVTDDKVVRDVWNISEVKAEYEQALVE
Ga0222717_1000448316F009460AGGAGMAKWDLSKLENSASVGAHIDEDSSTPTQPTRQMLVMSIRRKADIMRMDAGRGPERLTIKQRAEEIMALCEMLERRL
Ga0222717_1000448317F005590GGAGMTEHLTPLERWKELAIIENARMKRRLIGRDDMHAYAHKPWPLEKLRKEIKRCLSRHDELSVGDLCSMIEQDAVHIDIGLKTMRERRTIVKTSFIEGQQLYRLRTQEEFAF
Ga0222717_1000448319F010322GGAMVWTCSVDDDFTLTPEQHAEMSAVASNTMSEANALMRDMLATTEHTEMPDLAKVYALGAALQSVVGHMRQHDCDVQDAIAMCMGIIFETYSMPDKEDMH
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