NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10008822

Scaffold Ga0222717_10008822


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10008822 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7107
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000375Metagenome / Metatranscriptome1217Y
F013099Metagenome274Y
F062168Metagenome / Metatranscriptome131N
F065691Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0222717_1000882210F013099GGAGGMNTVWILLWLVLVPDNGVRYYHLGTYDNETLCKTGQRDALVMVNAKNETVECIGVQVDD
Ga0222717_1000882211F062168AGGAMTMTTKGDLKDFLKEMGLESVHPKPSATKPDYMKPGFYIDPRDAKGEVPF
Ga0222717_1000882212F065691N/AVPLNIYIPEPDIILVVLLSFLAGFLYRRYYDNETISDAFEEGFEKGAHSVVAAVSQLIGKDISIDFGKEQDDDYDN
Ga0222717_100088228F000375GGAGGMTKLYDLEPMIMDCWHVCDDLQVVFRQIGDGERDPTHDEMMNTLIGMQQLYQWKFEQLFNKYEDVLRDKE
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