NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10010426

Scaffold Ga0222717_10010426


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10010426 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6471
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043372Metagenome156N
F056579Metagenome137N
F058959Metagenome134N
F071197Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0222717_1001042613F043372N/AMKTLFERLRPEQRKRLQELKKEMPFVQDGLVKILRQHTLLIHVPFGDVIDIVRYLGDGRHSIGDGIVAVYNCFEDIDKTGDDPSLQSDHNAQTTNT
Ga0222717_100104263F071197N/AMNQLAPLTADIVAAKQGQQMSSLNDDDLGAFLRDEVKKALNRLGRKQIDPDVLKIAVEDIANDLRTKYRILTIEEVSIAFREGARRNEEHLFSSRTLAQWLETYMKEIRVKAFDHSIKPEKALPQETFDREEFITKAFDRFNIGGELYGAERLYHHLEKMGKIDMTTIEKWQALKDTIEKEMEDTANCISNPILRNSARKRMDELKAAKIEPTKAEEWIRVATMRHIVEGYFRKCYLSKVSPV
Ga0222717_100104266F058959N/AVIEIRQKAERKFCNIGGLWYIFRKLLFAREVEVLIYFPDDMKEAYMSKKRAYKYKPIVGWQGRGRCQDICFRIFQEGNVLETARTLEDNNKMHMNVREEKASASNDIPVKAYMMTRRAGEWFPILPLHPYPSNSFRYRVAIRRVK
Ga0222717_100104269F056579GAGGMANMVTEIEEGNESALQAFLSFRNIEKIAKECMKQIEPLALQELSSYNGRIEQGDVVIESRSSAGRWKFTDDAHAELKQQLKDAEELRKQAHKLHLKGSEVIDPETGEIVPPADYTPGKESIFISKARKS
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Institute for Fundamental Biomedical Research
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