NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10010532

Scaffold Ga0222717_10010532


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10010532 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6434
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (95.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025150Metagenome / Metatranscriptome203Y
F047922Metagenome / Metatranscriptome149Y
F060355Metagenome / Metatranscriptome133Y
F065219Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0222717_1001053216F060355GGAGMKLKDDVIEKWESGEYTIYDIAEEYCTTSEAVLKLLGLAEDPFSYELH
Ga0222717_1001053218F065219GGAGMKYDLQQDHNTGNWWIVEQDETGYRTIVLTLSADLTRFEASRYLEKYIEEAKNGQNT
Ga0222717_100105322F025150GGAGGMINVQTEGKHLPEYDTFIDECIMALFPEDAKYDLYIEFKKYIDKDGSHAGFCMGDDIESSICIATHWMYEDAEEVAYEPHEIASNIAHELAHAKQFYKGQINMIDHVWKHNQETINCEGLEYAETPWEVEAYAYEDILTDLLWENV
Ga0222717_100105324F047922AGGAGMTPQEIVDHKRKWMMANYFESHIHTDLRSEVYSWCKEHCFQWRFDIKKFTDIYGDTVRFELKEDFDSFNEWYEEQWNEENLDDMETRSRIV
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