NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10015609

Scaffold Ga0222717_10015609


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10015609 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5171
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015477Metagenome / Metatranscriptome254Y
F041743Metagenome159Y
F052627Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0222717_1001560910F052627AGGMSKRTDLISKITTNLSAYTAFTVSSEMPFISGGIPLYEKNMKTIYVGEQNIGVGELYDTLDGQVINETTTNINAYLSVDAKEQLTNIDTVIAQILLARNGIANTVTSTSEYDTDIVNDVITYTFEFNFTTV
Ga0222717_100156092F041743AGGAGGMSLQTIIDNAQYITVDRRELTGSSMSRSGHYKTADRNVNVYSFTMGMHNGLKYSTNRAVLEDLYSATSTTTEANISLNNNTDMNYLTDYQGDLTSPQQAQITVNGVTGKEIYIDQTGITGDVSGYTHILKKGDFIQPEGNVGGYRYPYQVTSDVAFNIADSNTTVGVHRPVLSQTGVALTSGGVKLGNDVTWRVKVTSLPTYSVVPYDRIEFSETFNLIEVIT
Ga0222717_100156097F015477GAGMEIAKAQNEIRCAGADVKKASNRLAFCLSAVHNLKDRLDKDIQE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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