NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10024653

Scaffold Ga0222717_10024653


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10024653 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4008
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (38.46%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026712Metagenome / Metatranscriptome197Y
F031255Metagenome / Metatranscriptome183N
F035552Metagenome172N
F050369Metagenome / Metatranscriptome145N
F077286Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0222717_1002465313F026712N/APTNSEQQVMMDIVINEFANRHLPMDNYNVQEVAYRQAISDGAMRTDNYFNI
Ga0222717_100246532F050369N/AMKITERDLRNWFPADRRFLHFCAKYYGYSFHNDEVVERASHLAVLNVMRLVNRDEEFENEAHMTGIVMSSFRYAILNSYSNSLSANEKNLEVRNESEVTYGAGDEEYSKYQANAIADTKEIDNLIDVVTKYAETNLPYLQRRALIECVIGESSMKELATETDTSVRKVHLAKQKAVRRIKKFIGVLNENEEKYGKKEADGKYISPSRSKLQIAIQLEPIREDETRERNHSKAMSFIHTPPKV
Ga0222717_100246533F035552GGAMKIKDDLLISADLSNLYWVLGELAEKAKEDDDLIKVLLQLEQFVETHKTRTRDMVTYRDTIERARNEYRSLKLKYDGTVEALNLKTKLLSQVMNEKMDEDVNNQF
Ga0222717_100246535F077286N/AMSKYKYTVEWEGDVTNYKQDFETIEEARIAMIMHHKRNAVIRVIKIDDLL
Ga0222717_100246537F031255N/AMIKYFNEVVAELQSKGTIFGAEYRKKNGELTKINGRFGVSKFVKGTGTSNPNVLTVWDNNRKRYTSLIPDNIVRLTTNKRRYLKTDEFLIENYE
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