NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10028631

Scaffold Ga0222717_10028631


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10028631 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3692
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007723Metagenome / Metatranscriptome346Y
F021182Metagenome / Metatranscriptome220Y
F022080Metagenome / Metatranscriptome216Y
F031507Metagenome / Metatranscriptome182Y
F040113Metagenome / Metatranscriptome162N

Sequences

Protein IDFamilyRBSSequence
Ga0222717_100286313F040113N/AMRIGYKKFKEIKKWYGSSDFEIGYDSYFTQGKGITLRFGYWQKVDFEGLHEILPHYCKVTENIVDEDDDCGTLYNYNITDDRIY
Ga0222717_100286314F022080N/AMIKEMNLGLVKMNESKTELYGVQYYKSKWERNLGDTLTIDGEKWLVGIIGDTKNGVTSALNDIVKKHNSIINKKKYQQRKEEKFIMNNILNNVMKELNL
Ga0222717_100286315F031507N/AMNIQVNSRVKFENKYGTIQEGIVTDTNYQCEFDADLNGSIVVDIDYGNKIIGKISTLIDKSQII
Ga0222717_100286316F021182N/AMSKLNERYPNGYMGKIEYWTSKLNAEVMNTKVPNLEEIDRIHRKLDYFIQRQWDSVVTVK
Ga0222717_100286317F007723N/AMIKAIKSKLLTYLFKDWVMNETDLETLQVSKQFIKKREIQITGHTPVMGFRSHTNQ
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Biomedical Sciences Research Center "Alexander Fleming"
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