NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10049855

Scaffold Ga0222717_10049855


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10049855 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2717
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004688Metagenome / Metatranscriptome428Y
F016342Metagenome / Metatranscriptome248Y
F049999Metagenome146N

Sequences

Protein IDFamilyRBSSequence
Ga0222717_100498552F049999N/AMERSHCQMKIKNYLVIIEEVNRLQFEVEAYSETEAIDLVEVGEAGDPTDQRAMEFNCLSVKEYIK
Ga0222717_100498553F004688N/AMIKKYTMPCIHMNGSGETSLRRQYNELFCAVSDAQVKLLYDTDFHERDYYPLGGEAWDKAYKEREEIKEAMTEIYQYAKQHMHYLDYGKEPLPDED
Ga0222717_100498557F016342N/AMKARDYYALKDEGILKAVEEKDIIKQSSQGNFGMYDVMPINNARIVSEACDRFFKSRNIRYGSAWFHDRIDRKKKIQQAKDEQNTNS
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