NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10052685

Scaffold Ga0222717_10052685


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10052685 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2633
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004549Metagenome / Metatranscriptome433Y
F048277Metagenome148N
F052562Metagenome142Y
F063608Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0222717_100526851F052562N/AGDETMAELYTEFAQEWNDLARNAGRKFTPSAAHEPEQSAFDFGDIEMQEHLSKLPHQLKETG
Ga0222717_100526853F004549GAGGMNIKKFKSVAVAIETYKLLKKIAAADDRSAGMQITYLVKQEAKKRKLTA
Ga0222717_100526856F048277AGGAGMFHLWHLSAIIGVLVIGFFFGRWSVRTKYEAKLEELENRKESVEWAARHH
Ga0222717_100526857F063608AGGAMGRKTPLKEKLLREYVKVSKTAVRNPRNWREVAARMRWERLRKILWRRYDYMQSM
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