NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10077064

Scaffold Ga0222717_10077064


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10077064 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2115
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017488Metagenome / Metatranscriptome240Y
F052627Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0222717_100770642F017488GAGGMAFITDGAGKVISFAEYTDVVQKDQRVLESNNLKIPAESGFADVTEFIEDMLEKSTSRLLLKIKASTWWQGYNAFVGNAISNLNNIPNVDPSLIDPGNLQGRRQQFTDMCVYYAFAEYLLPLIADFGNPESEETSKITYYNAKYNDLFNELLAIADWYDFDNSGAVEVDEKAVSYAPTRRSRSRRSITQVR
Ga0222717_100770643F052627AGGMSKRTDLITQITTNIAAHSNVSISSDLPYDSAGDPLYDKNMNVIYVGEQDIDVEELYGTLDQGSVFQTTTSIPVYLSTDAKVQFDDIETIVANLLIARNTITGTVSSDSSYETEISDDVITYSFEYNFITV
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