NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10231702

Scaffold Ga0222717_10231702


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10231702 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1081
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035273Metagenome172Y
F040601Metagenome161Y
F046983Metagenome150Y
F085562Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0222717_102317022F085562GAGMDDFTKKSVEKFDKGTVRAAEKLIDSSPELKKIRSIKDGLKPSEITTGVNDAQYKAGYDNIKWSKDKPKATFKIRVNGKLINPDEEE
Ga0222717_102317023F046983AGGAGMKIPESWKKDSTHVTLGVNTMSLLGLSLMWGHMLELISLWFLPLTILSILAGFGNEVRKRDA
Ga0222717_102317024F035273AGGAMTAYKVWDSQRKDMTLYTPKELYKVVVDYPKTNRTLEFIGMDRGSCIMQAEVAKQEGDDLMLMQTEETITILNKEKI
Ga0222717_102317025F040601GAGGMANVEYIIKVIEPEKEYLKPFVQPTLDDCRREAQSFLWSRPEGTQYIYVATRMRDDSI
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