NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10000025

Scaffold Ga0222718_10000025


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10000025 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)173519
Total Scaffold Genes242 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)209 (86.36%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033640Metagenome / Metatranscriptome177Y
F033815Metagenome / Metatranscriptome176Y
F053555Metagenome141N

Sequences

Protein IDFamilyRBSSequence
Ga0222718_1000002512F053555GGAMTDDWQLQANTWINIAYSCMETPLLPKYQYHVLDRCLRGASDIISCETTAVHSNTASLIQWCKMWSSEALFKYQELKDEMTEERQGKPPTHRQICNSRIPNRKGINSRWFTCEHEYPMIIPKKGVRDHGWTLEKLREWMWTYSKVTIILNSENDRLLPFTEDMELAAKRYEDAGIVICEHPYHLEKDVA
Ga0222718_100000255F033640AGAAGMSDNITFFYRSIDDPMGWTETFDSLEEAKKHFLHFMGKTYDIGSLYAVNAYGDVTCVVEGATWRELGLE
Ga0222718_1000002591F033815AGAAGGMDWFTSDLIHAMNETSWFDGIGTIVVLLVAYAAFRWIRKNI
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