NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10000183

Scaffold Ga0222718_10000183


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10000183 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)63770
Total Scaffold Genes114 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)87 (76.32%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005315Metagenome405Y
F007006Metagenome / Metatranscriptome360Y
F053555Metagenome141N
F072868Metagenome121Y
F104790Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0222718_10000183112F053555GGAGMTTSLEDWKLQANTWIEIAYSCTLTPLLPKYQYHVIDRCLRGASDVISAESTSVHSNTASLIQWCKLWSSEALFKYQSIKDDLTEQRGGKPPTHRQICNARDERGKRWFTCEHEYPILIPKKGIRDQGWTLQQLRDWMWRYSKVTIILNLENDRLLPWTEDMSVAAKRYENAGIVVCEHPQYRID
Ga0222718_1000018339F072868GAGGMFFKLASKNAYRDLVRNARRISISELSDSEKSEAFTELYTLLKPRLGETSRTLNAEAAYAKRCIFQNAVNQAEIKPVQNVRNPWLTFKREFESAIQSKNPSSVSRALAWFYYQPHRDDWLAF
Ga0222718_1000018344F007006GAGGMEPALKAELKQEISRIVDLMVQAEAIREQIASLKKDIKTEYGLPVATITKVASIIRKQNLDEEEEKWEEIKEFVDACS
Ga0222718_1000018345F005315N/AMYSACASKVIPICSQRLFNPSCLKAGFGASKLGIDQELPTIKISSMLIITCGDSYTQGEGLSDKQQAYPYLISQNAELKNLSQSGASEYLITTQVEEAVKLKPDLIVVGHTNEYRWQIWDFRNNCTQGFIVANHVLQNEKYYRNWILSEQILGNRRKNTKEHQAAWHAAGMLYFSEEKLVQQLWSGAVSKQIILAQKAKIPIVHHCCFGHLQPLLEELTDDYIKFHLDNEKHKDPAPDQSHAGPDSHIKLATMLKNKHQQIL
Ga0222718_1000018373F104790GGAGMAVRKLVKASNGTKSWKSMSSSVKRRVTDDWCAFYTPMGRMVSKPAGRRPRHMHPEEWCADKTPFKGKVIRSF
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