NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10000602

Scaffold Ga0222718_10000602


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10000602 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36714
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)53 (88.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023578Metagenome209Y
F035315Metagenome / Metatranscriptome172Y
F071780Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0222718_1000060223F023578N/AMYWEVGIQIGAESGQVTVHPAALEQSEWSNAVEHVMEMAQALYPNLQIEFNYVKEYDNGV
Ga0222718_1000060227F071780GGAGMSDLVLSDYERGYLTAYYDTVVFDAMADSCDEDWFGVQIGDRMFDLNAWADEDTGKFVCVVYDCIWVNDNWQTNSVLNGWVLTEDTDT
Ga0222718_100006023F035315N/AMEHVFLLFVFVGIGEEKRLESRDLYFKDLKECVWYAQTLHKQGSEITAYCLPKYVNPGNVRIY
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Institute for Fundamental Biomedical Research
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