NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10000959

Scaffold Ga0222718_10000959


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10000959 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29201
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (89.74%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025294Metagenome / Metatranscriptome202Y
F035273Metagenome172Y
F040601Metagenome161Y
F046983Metagenome150Y
F085562Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0222718_100009591F085562GAGGMDEFTRKSTQHMDQKLVKQAIKAIDKSPELKKIRSIKDGMSYSEINSGVNDQQYKDNYDNIKWNKDKPKPKFKVRVNGKLINPDED
Ga0222718_1000095937F040601AGGAGMANVHYVIKVIEPEREYLKTFIDQKLDNCRQLAQEYLWSCPAETKYIYVATRIKNA
Ga0222718_1000095938F035273AGGAMHNPVYKVWDEQGKYMTRYQEQECYKITVRYPGTGRTLEFIGMDRGSCILQAEVAKEESDTVMLMESEEAVTLLKKEKI
Ga0222718_1000095939F046983AGGAGMKLPEYLNKESTHTTIGVNTMSLIGLSLMWGHMTDMISLWFLPLTIITLLAGFGNEIRKR
Ga0222718_100009597F025294AGGAGMEASNDTAVQPEIVEPVTDSANPVATEQSVATETKSDNNTTPSVEVKDGKTYVNGIRQYSRDDVNKISANAKNEVQKNILNELNVDSIDQVKQVVSTLQEVNPNEGSSLNVDSLRDAVKKREATVEELKSQVNSLKTDLMLKDHMGQLQNAMPGNWSAQQKESVIKLMKADGMLAVEGDTFAIRNGNDFLTTDGETPDYAKAIELVGKDKLGLSFGKKGVDVQYGETGLTDSGQGPKAYSTDKVNTDTEYRSAYMRIRHNQPGLAKSSITDAMVKKEMQR
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Institute for Fundamental Biomedical Research
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