NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10001126

Scaffold Ga0222718_10001126


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10001126 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26737
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (90.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012772Metagenome277Y
F061866Metagenome / Metatranscriptome131N
F090275Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0222718_1000112636F012772GAGGMTGESFYLDIDGVTWQYMLVTDPEAALYWNASSYKLRLGDIRIATKCSPEDRKRLRREILKDIEETDDGIRC
Ga0222718_1000112641F061866AGGAMAKKGHKDLHPKIISMAEKGMKGVDIAAELGLSPNSVRTILFNHGVKLKTPIGRPMVDNPVRNRFRVPKVHKGPEQVMPDPFMRALNKDV
Ga0222718_1000112642F090275GAGMYKELEQKCKCGQKMLEVLGYVEKQDGDEHPKAFRKGWYCPWCKNWEDAILREKIVEEE
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