NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10001326

Scaffold Ga0222718_10001326


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10001326 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23951
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (28.21%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006322Metagenome / Metatranscriptome376Y
F016811Metagenome / Metatranscriptome244Y
F031255Metagenome / Metatranscriptome183N
F035552Metagenome172N
F050369Metagenome / Metatranscriptome145N
F077286Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0222718_1000132615F050369N/AMKITERDLRNWFPADRRFLHFCAKYYGYSFHNDEVVERASHLAVLNVMRLVNRDEEFEDEAHMTGIVMSSFRYAILNSYTNSLTANEKNLEVRNESEVTYGDGSEEYSKYQESAVSNDKEIDNLLDVVRDYAETKLPYLERRALLECVIGESTMKELATDTDTTVRQVHLAKQKAIRRVKKLIGVLDENEKKYGEQTDNGKYISPSRSKLQIAIQLEPIRRDEARERDYSKAMSFIHTPPKV
Ga0222718_1000132616F035552GGAGMKVEDDLLIQADLSTLYWVLGEVANKVKEDNDFIKVLLQLEQFVETHKTRTRDMVTYRDTIERARNEYRSLKLRYDGTVEALNLKTKILSQVMNEKMDEDVNNQF
Ga0222718_1000132618F077286GAGMSKLRYTVEWEGDVANYKQDFESIEEARMAMIMHHNRNAVMKVGILKED
Ga0222718_1000132619F031255N/AMIKYFNEVVAELQSKGTIFGAEYRKKNGELTKINGRFGVSKFVKGTGTSNPNVLTVWDNNRKRYTSLIPDNIVRLTTNKRRYLKADEFLIENYE
Ga0222718_1000132630F006322N/AMPAKRNKKGDVVSGRGSELTTLQSEFLEGIRNNGMDASNRIAKELNYTNYYRDRRTSGTAFHKELMAIANSEMRSIEAAKGTNLSALIKIRDIALANDDMKAAMEAIKIINDMQGYKAPTKVEQTKIDITATIDLTAPEEEQDYLDIDAD
Ga0222718_100013266F016811N/AMSDEGQMIYDVGVRLAWKKKRGNGYTNMYQGTKDRPFQFVTRAKSLDHINRNPEMIAKMMSFVGATGKAVYDFHIIEEFYRKEISNSFSHKEEDYSKEFGE
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