NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10001540

Scaffold Ga0222718_10001540


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10001540 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21820
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Acionnavirus → unclassified Acionnavirus → Synechococcus phage S-CAM8(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019759Metagenome228Y
F070646Metagenome / Metatranscriptome123Y
F073480Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0222718_1000154011F073480N/AMTGFKSEAAAAAHEQYMRTVYLDVLYELDKRDDPDHEFRGCYTGLFQKYGEKYDG
Ga0222718_1000154018F019759GGAGMIEPCQQSEFFMERLRRQSQGMSREELLVVVDTLSRLYCTTKAGANWLAKEAARNISAKC
Ga0222718_1000154034F070646N/AMAIYNSNSLDRSILSTELPHLSCNELGKLYHELIDCINEITASLAEVSSFEEKHGYAPDTEWCYRAKKKLRISTQFAAKIEAMNKPLPKSYDELYQDHFLRILLEELGPASLKKIQAEASVIARSESNE
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