NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10002159

Scaffold Ga0222718_10002159


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10002159 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17942
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (82.50%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000302Metagenome / Metatranscriptome1337Y
F000724Metagenome / Metatranscriptome919Y
F010653Metagenome / Metatranscriptome301Y
F023755Metagenome / Metatranscriptome209N
F026745Metagenome / Metatranscriptome197Y
F081915Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0222718_1000215912F026745AGGAGGMGTFTTATGLGMLAVGFAVILVAGIIIYKIINYEKKEDTYGK
Ga0222718_100021592F010653N/AMLLRTFVIYALMMTVCALAFHDNTFAVFDLKEQLQWLQINLWELLHQLEYVEPHQRLVVYDEIQHIRTEIQRVIGLLVEHDRSQHPQP
Ga0222718_1000215924F000302AGGAGGMVETMTQDTKDRIAELERQKIDLNDQLEILGYTGNLVRMHQIEEQIFEIEDTIKKLLA
Ga0222718_1000215927F023755GGAGMKADYINMIINFSILGLLIYLAVAINEIKDKPKQPAMMGYDQGLEFKYNIQEFLNNALKEAINQQENQ
Ga0222718_1000215933F000724AGGAGGVPNKKEKFWTMGMPKGGVGPWVWHVWTKGSKKPVRVVAFDLDHIRCQLEDRTVIKAKRLPEEKDEYSSMPLGPKGSTVNRPADYDAGFRILRQWVDENGGPPESIRKRLRELYIDYDKGK
Ga0222718_1000215937F081915AGGAGMTYRKNTYYTQELDKDTLNSMITVSFSRESDLTQSVLRWAVREDMIKTRYELDIALETVSDLNDWPEGEGYGSSDRAGDLRSIQDAVERSRRYIKAEKELWIVNDKEPLVGNVLAYMNMMDKIKAGLTEGGQ
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