NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10003192

Scaffold Ga0222718_10003192


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10003192 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14189
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (82.61%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008798Metagenome / Metatranscriptome328Y
F054006Metagenome140Y
F062721Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0222718_1000319219F054006GGCGGMANYFAHTVTDTATKVLDADNLNREVFLQIIGNTTVYLGDNDAVTDANGFPIVKHTAPIRGLLGAGQELWAIVASGTESLRIFTTVD
Ga0222718_100031924F062721GGAGMNLTNPPKALIAMVAMIVIAVLMVADSIANEAGTGMLGTIVGYAVGNGIAAKGGKPVEPIIGKKAGQ
Ga0222718_100031925F008798GGAMADVYTRDELVALYPDGTVSVQVDDEVTPMTTDEWSAWIDAQVGIEKPANDELP
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