NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10004845

Scaffold Ga0222718_10004845


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10004845 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11047
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025018Metagenome / Metatranscriptome203N
F038653Metagenome / Metatranscriptome165N
F039048Metagenome / Metatranscriptome164N

Sequences

Protein IDFamilyRBSSequence
Ga0222718_100048453F038653GGAVNFVSASIPYISTASTNSNVHAYYIVLEVPNYGILTDRIYTVDNPPEGGDTNLNFAYTGTLITPQVTNPQSNNYVMSSMNDRISVQKTVPVMEAIRVSIYYYDTSDSSFKLYPFDNAGTDTEEFVLKLSVQATKDKRFATRQQDEEDKRLEPKIASPVTPGSENTFARKLINYYRSSTRNKLNSEAPMEPVGALLPRREFMGVPTKYAQILIPIAVVLLVLAILLAK
Ga0222718_100048454F025018N/AMEGYDYDPDEYATISSETESETEKSLVPLEHEESIQIIKPQVEYSELDDVFSEELDDFDLRDFFIEKKQSNNRVCQVTTSLSIVQPEKTEPQPMLTTSPPISAHPFTESNL
Ga0222718_100048459F039048N/AMIYPTTKCHWCGVPLQWTSRYDFVTYAFEYFQIEYRIPLERMSRVYHKGRSSSRKNVCRSCYKLKMNNIHQREITGKMVRLKSINITPGIGKFLIKLFDQSWRHQRYIEFMWTNGHTFDAFLDYLCARDTIMGNMSGDIFDNEYLEYYYEDMVRSHFDVPTNFEATWNEEASIIGFQLNGTDMISINAHPVVE
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