Scaffold Ga0222718_10005879

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0222718_10005879

Scaffold Ga0222718_10005879

Overview

Basic Information
Taxon OID	3300021958 Open in IMG/M
Scaffold ID	Ga0222718_10005879 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9853
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (85.71%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.6183	Long. (^o)	-122.2916	Alt. (m)		Depth (m)	12
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F047978	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1000587913	F047978	AGAAG	MRILVTTILLFSLNAAADEVTEFKPRPAVVEEGTDTYVGILLSEEDFRKLLQDKIDTNAKIAECDVDTKVCTRLQETYLLSIKNLEETIKRDNTWFRRNKGALGLLSGLVIGVGTSVAIVKAVYQGQ

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