NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10008582

Scaffold Ga0222718_10008582


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10008582 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7861
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (18.75%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008453Metagenome333Y
F016269Metagenome / Metatranscriptome248Y
F017473Metagenome240Y
F025275Metagenome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0222718_1000858212F008453N/AMSKYANDYAVYRIFRDHNKRPKVLMDSLTREQAQTIVQNTPSYENSMVVFDKMR
Ga0222718_1000858213F017473N/AMTTQRKEEHIRNITFCIKTGASGYVTDNFRIDDLPTPQTAGTLTQQDAYARGKARIIFDAFIEQNPDINEE
Ga0222718_1000858215F016269N/AMKVNQFIFICEDYNVDPCVALENDGVRKILKTPTSDVKQQLMLSGYLHKNF
Ga0222718_1000858216F025275N/AMKYYALLHGVCGLAEGYSDTTARWFNDLDKAMEAKQKSLTGLMETKHEEIVSSTDGMQDIIIYDDLNSEQEILKVIEVRPTWPKHPSINEYFVWDQMNCEAPFDGEYMPTDLAVIKDLCERQEAVADTFDVESFHEFVNDLWYGGNAMFDADDLCIYYFKMPKVHLPSQPVEFKS
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