NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10016784

Scaffold Ga0222718_10016784


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10016784 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5182
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (13.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010243Metagenome / Metatranscriptome306Y
F045689Metagenome152Y
F060928Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0222718_1001678412F010243N/AMNRPTFVLETKSRSGVRGERIHKCVANSLSEAVEIFATIKQLRPDQLLEIYSVYEQPTDG
Ga0222718_1001678414F060928N/AMKKTELHDMVLETVSELVKEAELSTGDNNFTIKVDVNRNPTKKGIKIQLIPKAGTVLVDPDEKIDVNEKVQSAMNAKLRKYDLQVNIDPDIKQATDNPNVLGYYIPLNQFKNLILKALKG
Ga0222718_100167848F045689N/AMDKKERFQLAKKNVLKRFPKATTLADSKGKFYVAQNGVDICNKELNKAVKRGAALEELDLIQQVSHSETVFEAWLKAESMVVANRVIESNTERFSDEKVIAKMKEE
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