NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10022959

Scaffold Ga0222718_10022959


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10022959 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4291
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058127Metagenome135N
F067702Metagenome125N
F076035Metagenome118N
F097265Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0222718_100229591F097265GAGGMLVPEIVKKINSDKVVIKYGNDYVLLSHAPAREDGYPQWDETLAFLCNEDGEVKNWLEVAGGSGMNISDVISEISRFGITKRGAYQ
Ga0222718_1002295910F058127GGTGGMKVGDLVEYSYSFDSQFIDHWTADNKICFVILRDRDDTYVWAKPQFPLNTQGASVLAIAQDSEYPGTRDGFWLLEKERCRVISTLP
Ga0222718_1002295916F067702N/AMNKVMSVCMDNFPTFQWKINVHDDECYETTVSGSFGPFNTVDVFTEGNKHVVVSEFGAEGKWDQECDDVQLQQTLEDLSQAFNYEQQRWIDLINGESSYGE
Ga0222718_100229593F076035GGAGMDTHLSNKVEGLEFVSLTEITPNQLLGHYSRSRVVVEMAKGFSILVSADQFSNKELRWVGTQIGEA
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