NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10023307

Scaffold Ga0222718_10023307


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10023307 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4251
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017421Metagenome / Metatranscriptome241Y
F043151Metagenome / Metatranscriptome157N
F075451Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0222718_100233072F017421N/AMYTLEKRKMIYIMTRKPVWYHTHCITPWRGTPLWYDPTWVIGDCDLCQMDVEGQDWWNGCSHNNSQKSIFDRIELQKKHWF
Ga0222718_100233076F075451N/AMTSQIPRRTQQIKRYYLDRRQAEKHCEDIEAYMETELRAYIKYAANHLLEGSTMTHRQRVDFVRSWMRSWLADDALHRRIPRKR
Ga0222718_100233077F043151AGGAMIPYTDQENAYLSSGSYRKSNRNRTRRVKQETDLRKHDWAIMTTIEVDGREYIVPVQV
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