NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10038824

Scaffold Ga0222718_10038824


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10038824 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3113
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015477Metagenome / Metatranscriptome254Y
F017488Metagenome / Metatranscriptome240Y
F052627Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0222718_100388245F015477GAGMEIAKAQNEIRCARADVEKASNRMAFVLSAVHNLKDRLDKDIQE
Ga0222718_100388248F052627AGGMSKRTDLISQITTNIAAHTSFAINEELPFLSGGIPLYEKNMRTIYVDEQQIAVDELYDTLDGQAVNQTTTTINAYLSVDAKEQLTDIDTVVANLLVARNGIANTIESTSDYETDIVNDVITYTFEYNFITV
Ga0222718_100388249F017488GAGGMAFITDGGGNVVSFAEYTDILQKDQRLLESNVIKIPAESGFADVTEFLEDVLEKSTDRILLKLKASTWWQSYNAYVGNPISNLNALPNVNPNLIDPANKLNRRQQFTDLCVYHSMAQYILPLIADFGNPESEEVSKITYYDAKFNDLFNELISIADWYDYDADGTVQADEKAITYARTRRTRSRKSIVQVR
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Institute for Fundamental Biomedical Research
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