NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10056586

Scaffold Ga0222718_10056586


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10056586 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2461
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028777Metagenome / Metatranscriptome190Y
F035554Metagenome / Metatranscriptome172N
F058532Metagenome135N

Sequences

Protein IDFamilyRBSSequence
Ga0222718_100565861F058532N/AMMDGIIGTVLNIVGVDMTLNQNGRRQIVKDEYDLFDNKARTSWEFICNYMNWEIVKNKEDYFEDYVCKIKGIYYPMELQVAAYWHNHSIDKLSNFYISKSKIDLLREYVDKYINVEAGCVFMNCVPNKFATINIKNIKDIYLMQNAQGEYFYKIPISENINYFTSGLIDAKCDCLENHLEIMQRSKGRMRHLEKEYNI
Ga0222718_100565866F028777AGGGGGMLGIFGRNKPLSTFEIISLEKNISEAKKIRYILEVEGFICSLDPEFSASGNLRKVVHRLNNSYNLSIYKEECNCDNKQKANLNLDGTPRKHYAYRKDWAS
Ga0222718_100565867F035554N/AKMVVFKTSFYTKDNVSPKCTGHGSKYSTEDHWLEKAEQKSRGRCLRVLLGSEPTAEEMEGIVPSKTTAPNKKSLDEKVKDLEAEGLVEDISMKAQAVMDNIKDFAMEITNQDLDLARNYTAQALGSMGISKTEVSINNLQSVKNKIQDIATMARAEIDKGE
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