NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10057056

Scaffold Ga0222718_10057056


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10057056 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2448
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021440Metagenome / Metatranscriptome219Y
F068594Metagenome124Y
F076623Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0222718_100570566F076623AGGMSKLIKKEYKDYTIIIEEQKPSVPKPQTEEQWDKHFETHGGETKGTHRYKVIDKEEVIINEDDTEMWDTQACLDNAMADIEVEIKQKLGGTHG
Ga0222718_100570568F068594GAGGMKEYIFWQEVKKHVREQCVIKANSLDEATEIHNDGGADYKEVHCFDEEITDEGTDEIKLN
Ga0222718_100570569F021440AGGAMSKKPTHFAVEDITFYGMDEDNEIITNDKGEEVKYRLKYGFRFKPLEYLCEDMTAEQLEIINETVPYNDIEEANQ
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