NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10083149

Scaffold Ga0222718_10083149


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10083149 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1926
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009955Metagenome310Y
F034560Metagenome174N
F055697Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0222718_100831492F009955N/AMLVRRLSRSLQTGTPFTQRGAQQLNTSGLITEQSDAVPDRCALEMNTLDDAARAVDEALQALGQASQDLYRCRYGDREVNAAVEWNSESEIEGGPLSRELRADAIVIERWRAAVLEFAQDKKS
Ga0222718_100831493F034560N/AMAEQNETPQDDDDGGIEWRTLNRTVRVDAATSQKLIDWIGPHLRLIVAAVAWGLFIIATCYAASLVL
Ga0222718_100831494F055697AGGCGGMRTAAAVFCLCTVLHFPLPDGWKFTIADPPAAAQPDWYLVSFGAEWCGPCRQWKRDHLAATRKVLPVVVVDIAKDPEWKRSRQLAAPPGGRATIPGITRVPTFWLVHRASRWPVKTWVGGKTADQVRQLIPDTVPDWTRETEAAPPLPE
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