NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10135933

Scaffold Ga0222718_10135933


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10135933 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1404
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053651Metagenome141N
F074169Metagenome120N
F087059Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0222718_101359332F074169N/AMKIKNLTTLFTTKKIIKNPIGNKNILFRRTTNRYGKKGTISHNVGYFYVSRDAETGRFVSRK
Ga0222718_101359333F053651N/AMKYNKKEKTLKEIDRRKLQKFEIETKCRIMKTLLGGNLKYRLQLNKDYEKKLLTYK
Ga0222718_101359334F087059N/AMKIQVIIKNVYGNQLIYPKCDTSKAFSDIAKTKTLSIENLKTISQMGYQVKVVNETNIKDLIQXNTIKKKRH
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