NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222716_10004316

Scaffold Ga0222716_10004316


Overview

Basic Information
Taxon OID3300021959 Open in IMG/M
Scaffold IDGa0222716_10004316 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11161
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0283Long. (o)-122.37Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012972Metagenome / Metatranscriptome275N
F056578Metagenome / Metatranscriptome137N
F077047Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0222716_1000431610F012972N/AMMNIIKYILILMNKMFYTKLWTNQTFHFVFHTTEVPHMDWVAFKEDVRSCFKKEQFNFLFDFSDVKVVQVVTIPKLIWEFSSLMRELKPKTEKQVIRSAIVTNPTFFTFKFIESIIWMYRNVRPIKVVRSLPEAYDFLG
Ga0222716_1000431615F056578AGTAGMIFILSTIIFSYIYIILRKLIPAPKLLDTVFPPLIYWTTSLASLEMFIVISPFGLVAGVPMLLLVWQVISTWIDYVSNQSGNKKLKQDKDKFKYLILTPVRAIVSLWNAIVNGLSSWFRVVTENWNNMTKLYVETLNLISNSFKFLSEQVTKLWTELVIAFKALWDQSIKLLKLIVTMGGTIDEDIIPPLPEQFEKSEKEAAQKKSKN
Ga0222716_1000431616F077047N/AMEYYILTGFLTLLLGPFVGFIPPVLFLLYYPITKLVFKALKKDTKELDDFYLAIPRFFNFTTITNFIVNWIIMPPINFLSWLPEAILSLVKFQFKVIEFLVITVPKYIFMGINFIVDNLIIGPIRFFTDYFIKVTDWIASGNASDYFTEAIIFWFELYFFQIQQLFNAFITGNFGHIFGKGRVVDTIRLPDAMFLLNTIKI
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