NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222716_10010963

Scaffold Ga0222716_10010963


Overview

Basic Information
Taxon OID3300021959 Open in IMG/M
Scaffold IDGa0222716_10010963 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6853
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (5.56%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0283Long. (o)-122.37Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044200Metagenome155Y
F076604Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0222716_100109631F044200N/AMSALPFNLNATTTKRAVGEKVEYITPGAHECKITGLTTSDQLEDYKGSPFIQYAVTSNGKVGRCRFWVVKETDKQSTQEWKSKQIKDFLVNSGVQDFSDDSKAMNEAIGNSLMVTFISEEYIGKNRDNQEPVIRTATKYRWSAKSGGKCTYNNDMNQTLTDEQMADFSKQHSDWSSANNSMSATEADDDMPF
Ga0222716_100109636F076604GGAVRPKRLLLMNLKKTIIMSDEVTTCCGSSFEDSWISDCCSVEMYSDSDICPSCKEHTDTTGYICNECGNWTEDLEDKYEYDARMEENYLEEKADARRKYGE
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