NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222716_10016312

Scaffold Ga0222716_10016312


Overview

Basic Information
Taxon OID3300021959 Open in IMG/M
Scaffold IDGa0222716_10016312 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5565
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (23.53%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0283Long. (o)-122.37Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003188Metagenome / Metatranscriptome502Y
F057295Metagenome / Metatranscriptome136Y
F059880Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0222716_1001631213F003188N/AMKSLKDNIRKVLKSRLDVSYRIKTKEPDKETMNKKIFVEVIDQLKKIEDRRDFMAEEIGMDMTIYEDQFFSVIENLFKLVFNKSQLGLIQMYLYQLVPDKEWDGTITIEVGKTEKTLPFKSASDVWDVIKTFEK
Ga0222716_100163122F057295N/AMVKLIHLDGEYYQLVRDINVEQVMGNMDALKAWRDMLHCDHVLKYQGKYLMVRRVLDAEVIEE
Ga0222716_100163123F059880AGGVVKLHFENTNEFERVFKATDVHITNAMVKGIQEAFMYQKKTADIFEITFDDADLAFEICLPASQWEIALETCLNHYRDLELADKAIDTYLLQKDIRKWLS
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