NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222716_10056733

Scaffold Ga0222716_10056733


Overview

Basic Information
Taxon OID3300021959 Open in IMG/M
Scaffold IDGa0222716_10056733 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2758
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0283Long. (o)-122.37Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012575Metagenome279Y
F054775Metagenome139Y
F055560Metagenome / Metatranscriptome138Y
F066795Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0222716_100567332F012575AGGMSVTEYIEDQAFVYRIVSDYKEVYIQWHMKDLPHLFTGRASSHEEKIEQYKSVLKELKKLNRKKS
Ga0222716_100567334F066795N/AMNLSKTFPKMTNNDWRKLQLSTDAKNQRDWASRRLHDMENDPDNFTLRDYLKVKAGYNTAVETLKELQ
Ga0222716_100567335F055560N/AMKKPTDRTDMNQLFDSLKPSKKEQAVIWLISPVIVLATWAVLIFICSL
Ga0222716_100567337F054775N/AMNQEKFNSLIDSLVDSVKDYNLDDSFDYYNAIVEICSNCDHSFVYYKAWQLVNFVRFEHFNVEGLGLFYEVETEVKDNDHNTDDITLNDYMMTYAFNILKVATLKKYESQVKELA
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